Introduction to Image Analysis Software (IAS SPRING 18)

Method course
Dirk Pacholsky
Department of Immunology, Genetics and Pathology
Dag Hammarskjölds väg 20
Rudbeck Laboratory, SE-751 85 Uppsala
11-15 Juni 2018
BioVis Platform @ Rudbeck Lab
1 week, 0930-1630

This course is aiming at those starting to analyze scientific images or are familiar with it and want an introduction to often used software packages. The course covers lectures and hands-on sessions, see exemple schedule at

Lecture and Hands On Session for
ImageJ, IMARIS and Cell Profiler

Image J:
- Free ware,
- versatile
- 2D, 3D, 4D
Cell profiler:
- free ware
- versatile
- High throughput data
- 2D
- non-freeware
- user friendly
- large data files
- 3D/ 4D data sets
- instant calculation of statistical data
- non free ware
- Deconvolution software
- enhance resolution of your image

Get started with aforementioned software and deepen your knowledge. See schedule for more details.
!We will work on your images and even image your sample for later analysis !

The course is restricted to 12 applicants.

Our requirements have changed to an attendance of 100% including an exam/presentation at the end of the course. Absence others than health reasons (e.g. lab meetings) results in charge of 1000 SEK.

Test licenses on Huygens, installation of Image J and CellProfiler, supplemental material provided by BioVis

Lecturer: Jeremy Adler (BioVis), Carolina Wählby (CBA), Matyas Molnar (BioVis)
Dirk Pacholsky(BioVis),

Dirk Pacholsky
BioVis Platform, Uppsala University
Dag Hammarskjölds väg 20,
Rudbeck Lab
751 85 Uppsala
070-167 93 38

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