Introduction to Image Analysis and Software

 
14,2
2016
Method course
Spår
12
2016-10-03
English
Dirk Pacholsky
Department of Immunology, Genetics and Pathology
MTC-huset, Dag Hammarskjölds väg 14B
Rudbeck Laboratory, SE-751 85 Uppsala
14-18 November 2016
SciLifeLlab BioVis Facility, Dag Hammarskjölds väg 14B, 3rd floor
 

This course is aiming at those starting to analyze scientific images or are familiar with it and want an introduction to often used software packages. The course covers lectures and hands-on sessions, see schedule found at http://www.biovis.medfarm.uu.se/education/image-analysis/

Lecture and Hands On Session for
ImageJ, IMARIS and Cell Profiler
Huygens

Image J:
- Free ware,
- versatile
- 2D, 3D, 4D
Cell profiler:
- free ware
- versatile
- High throughput data
- 2D
IMARIS:
- non-freeware
- user friendly
- large data files
- 3D/ 4D data sets
- instant calculation of statistical data
Huygens
- non free ware
- Deconvolution software
- enhance resolution of your image

Brief Introduction to Image Acquisition on widefield and confocal Images. Get started with aforementioned software and deepen your knowledge. See schedule for more details.

The course is restricted to 12 applicants.

Our requirements have changed to an attendance of 100% including an exam/presentation at the end of the course. Absence others than health reasons (e.g. lab meetings) results in charge of 1000 SEK.

Test licenses on Huygens, installation of Image J and CellProfiler, supplemental material provided by BioVis

Lecturer: Jeremy Adler (BioVis), Carolina Wählby (CBA), Erik von Stedingk (IMARIS)
Dirk Pacholsky(BioVis), Vincent Schoonderwoert (Huygens)

Dirk Pacholsky
SciLife Lab Biovis Facility,
Dag Hammarskjölds väg 14 B, 3rd floor,
751 85 Uppsala
Dirk.Pacholsky@scilifelab.uu.se
070-167 93 38

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