Introduction to Image Analysis and Software (IAS HT16)


Kursnummer14,2
År2016
TypMethodcourse
Spår-
Max antal deltagare12
Sista ansökningsdag2016-10-03
SpråkEn
Kursansvarig
InstitutionDepartment of Immunology, Genetics and Pathology
Besöksadress
Postadress
Datum14-18 November 2016
Lokal
Kurslängd
Kursrapport 
Kursplan 

 

Beskrivning

This course is aiming at those starting to analyze scientific images or are familiar with it and want an introduction to often used software packages. The course covers lectures and hands-on sessions, see schedule found at http://www.biovis.medfarm.uu.se/education/image-analysis/

Inlärningsmål

Lecture and Hands On Session for
ImageJ, IMARIS and Cell Profiler
Huygens

Image J:
- Free ware,
- versatile
- 2D, 3D, 4D
Cell profiler:
- free ware
- versatile
- High throughput data
- 2D
IMARIS:
- non-freeware
- user friendly
- large data files
- 3D/ 4D data sets
- instant calculation of statistical data
Huygens
- non free ware
- Deconvolution software
- enhance resolution of your image

Innehåll

Brief Introduction to Image Acquisition on widefield and confocal Images. Get started with aforementioned software and deepen your knowledge. See schedule for more details.

Undervisning

The course is restricted to 12 applicants.

Examination

Our requirements have changed to an attendance of 100% including an exam/presentation at the end of the course. Absence others than health reasons (e.g. lab meetings) results in charge of 1000 SEK.

Litteratur

Test licenses on Huygens, installation of Image J and CellProfiler, supplemental material provided by BioVis

Lärare

Lecturer: Jeremy Adler (BioVis), Carolina Wählby (CBA), Erik von Stedingk (IMARIS)
Dirk Pacholsky(BioVis), Vincent Schoonderwoert (Huygens)

Kontakt

Dirk Pacholsky
SciLife Lab Biovis Facility,
Dag Hammarskjölds väg 14 B, 3rd floor,
751 85 Uppsala
Dirk.Pacholsky@scilifelab.uu.se
070-167 93 38

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