Introduction to Image Analysis and Software (IAS AUTUMN 19)
| Course number | 14,2 |
| Year | 2019 |
| Type | Methodcourse |
| Track | - |
| Max participants | 12 |
| Application deadline | 2019-08-15 |
| Language | En |
| Course leader | Dirk Pacholsky |
| Department | Department of Immunology, Genetics and Pathology |
| Visiting address | MTC-huset, Dag Hammarskjölds väg 14B |
| Post address | Rudbeck Laboratory, SE-751 85 Uppsala |
| Dates | 9-13 September 2019 |
| Location | BioVis Platform, Uppsala University, Dag Hammarskjölds väg 20, Rudbeck Lab |
| Course length | 1 week, 0930-1630 |
| Course report | |
| Course plan |
Description
This course is aiming at those starting to analyze scientific images or are familiar with it and want an introduction to often used software packages. The course covers lectures and hands-on sessions, see exemple schedule at http://www.biovis.uu.se/education/courses//education/image-analysis/
Learning outcomes
Lecture and Hands On Session for
ImageJ, IMARIS and Cell Profiler
Huygens
Image J:
- Free ware,
- versatile
- 2D, 3D, 4D
Cell profiler:
- free ware
- versatile
- High throughput data
- 2D
IMARIS:
- non-freeware
- user friendly
- large data files
- 3D/ 4D data sets
- instant calculation of statistical data
Huygens
- non free ware
- Deconvolution software
- enhance resolution of your image
Contents
Get started with aforementioned software and deepen your knowledge. See schedule for more details.
!We will work on your images and even image your sample for later analysis !
dule for more details.
Instructions
The course is restricted to 12 applicants.
Examination
Our requirements have changed to an attendance of 100% including an exam/presentation at the end of the course. Absence others than health reasons (e.g. lab meetings) results in charge of 1000 SEK.
Literature
Test licenses on Huygens, installation of Image J and CellProfiler, supplemental material provided by BioVis
Teaching staff
Lecturer: Jeremy Adler (BioVis), Carolina Wählby (CBA), Matyas Molnar (BioVis)
Dirk Pacholsky(BioVis),
More information
Dirk Pacholsky
BioVis Platform, Uppsala University
Dag Hammarskjölds väg 20,
Rudbeck Lab
751 85 Uppsala
Dirk.Pacholsky@igp.uu.se
070-167 93 38