Introduction to Image Analysis and Software (IAS AUTUMN 19)


Course number14,2
Year2019
TypeMethodcourse
Track-
Max participants12
Application deadline2019-08-15
LanguageEn
Course leaderDirk Pacholsky
DepartmentDepartment of Immunology, Genetics and Pathology
Visiting addressMTC-huset, Dag Hammarskjölds väg 14B
Post addressRudbeck Laboratory, SE-751 85 Uppsala
Dates9-13 September 2019
LocationBioVis Platform, Uppsala University, Dag Hammarskjölds väg 20, Rudbeck Lab
Course length1 week, 0930-1630
Course report 
Course plan 

 

Description

This course is aiming at those starting to analyze scientific images or are familiar with it and want an introduction to often used software packages. The course covers lectures and hands-on sessions, see exemple schedule at http://www.biovis.uu.se/education/courses//education/image-analysis/

Learning outcomes

Lecture and Hands On Session for
ImageJ, IMARIS and Cell Profiler
Huygens

Image J:
- Free ware,
- versatile
- 2D, 3D, 4D
Cell profiler:
- free ware
- versatile
- High throughput data
- 2D
IMARIS:
- non-freeware
- user friendly
- large data files
- 3D/ 4D data sets
- instant calculation of statistical data
Huygens
- non free ware
- Deconvolution software
- enhance resolution of your image

Contents

Get started with aforementioned software and deepen your knowledge. See schedule for more details.
!We will work on your images and even image your sample for later analysis !
dule for more details.

Instructions

The course is restricted to 12 applicants.

Examination

Our requirements have changed to an attendance of 100% including an exam/presentation at the end of the course. Absence others than health reasons (e.g. lab meetings) results in charge of 1000 SEK.

Literature

Test licenses on Huygens, installation of Image J and CellProfiler, supplemental material provided by BioVis

Teaching staff

Lecturer: Jeremy Adler (BioVis), Carolina Wählby (CBA), Matyas Molnar (BioVis)
Dirk Pacholsky(BioVis),

More information

Dirk Pacholsky
BioVis Platform, Uppsala University
Dag Hammarskjölds väg 20,
Rudbeck Lab
751 85 Uppsala
Dirk.Pacholsky@igp.uu.se
070-167 93 38

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