Single cell RNA sequencing data analysis, 1 hp


Kursnummer50,81
År2017
TypMethodcourse
Spår-
Max antal deltagare30
Sista ansökningsdag2017-08-13
SpråkEn
KursansvarigÅsa Björklund
InstitutionSciLifeLab
BesöksadressUppsala biomedicinska centrum BMC Husarg. 3 751 23 Uppsala
PostadressAdministrativt centrum för SciLifeLab i Uppsala Box 3037 750 03 Uppsala
Datum2017-10-02 to 2017-10-04
LokalE10:1308/1309 (Trippelrummet, Navet)
Kurslängd3 days
Kursrapport 
Kursplan 

 

Beskrivning

National course open for PhD students (prioritized), postdocs, researchers and other employees in need of bioinformatic skills within all Swedish universities.

Inlärningsmål

This course will cover the basic steps in single cell RNAseq (scRNAseq) processing and data analysis.

Innehåll

Topics covered will include:

An overview of the current scRNAseq techniques
Basic overview of pipelines for processing raw reads into expression values
Quality control of scRNAseq data
Dimensionality reduction and clustering techniques
Data normalization
Differential gene expression for scRNAseq data
Examples on how to use these tools in a research project.

Undervisning

Applications are only accepted via the course webpage:

https://www.scilifelab.se/events/scrnaseq-ht17/

Course fee: 1300 SEK.

Entry requirements:
Basic knowledge in linux, bring your own laptop with R installed, some programming/scripting experience (preferably in R).
Desired:
UPPMAX experience, previous experience with RNA-seq analysis and/or previous participation in the SciLifeLab "Introduction to Bioinformatics using NGS data" course

Examination

Participation on all lectures, exercises and discussion.

Litteratur

The literature will be provided during the course.

Lärare

Åsa Björklund

Kontakt

https://www.scilifelab.se/events/scrnaseq-ht17/

education@scilifelab.uu.se

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