Introduction to Bioinformatics using NGS data, 2 hp


Kursnummer60,3
År2017
TypMethodcourse
Spår-
Max antal deltagare30
Sista ansökningsdag2017-10-07
SpråkEn
KursansvarigManfred Grabherr
InstitutionSciLifeLab
BesöksadressUppsala biomedicinska centrum BMC Husarg. 3 751 23 Uppsala
PostadressAdministrativt centrum för SciLifeLab i Uppsala, Box 3037 750 03 Uppsala
Datum2017-11-27 to 2017-12-01
LokalE10:1308/1309 (Trippelrummet, Navet)
Kurslängd5 days
Kursrapport 
Kursplan 

 

Beskrivning

The course will provide an entry-level introduction to a wide range of analytical techniques for massively parallel sequencing, including basic Linux commands. We will pair lectures on the theory of analysis algorithms with practical computational exercises demonstrating the use of common tools for analyzing data from each of several common sequencing study designs.

Inlärningsmål

Learn to use several analytical techniques for massively parallel sequencing, and to apply them in your own research projects.

Innehåll

Topics covered will include:

Basic Linux usage
NGS read-to-reference alignment (genomic and RNA-Seq)
Variant calling in populations
De novo assembly of RNA-sequence data
Reference-guided RNA-Seq expression analysis

Analysis techniques covered will focus mostly on data from the Illumina platform, but we will discuss other sequencing platforms and the advantages and challenges to using their data.

Undervisning

Applications are only accepted via the course webpage:
https://www.scilifelab.se/events/ngsdataht17ua/

Course fee: 1800 SEK

Examination

Participation on all lectures, exercises and discussions.

Litteratur

Will be given during the course.

Lärare

Manfred Grabherr

Kontakt

https://www.scilifelab.se/events/ngsdataht17ua/

education@scilifelab.uu.se

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