Introduction to Bioinformatics using NGS data, 2 hp
Kursnummer | 60,3 |
År | 2017 |
Typ | Methodcourse |
Spår | - |
Max antal deltagare | 30 |
Sista ansökningsdag | 2017-10-07 |
Språk | En |
Kursansvarig | Manfred Grabherr |
Institution | SciLifeLab |
Besöksadress | Uppsala biomedicinska centrum BMC Husarg. 3 751 23 Uppsala |
Postadress | Administrativt centrum för SciLifeLab i Uppsala, Box 3037 750 03 Uppsala |
Datum | 2017-11-27 to 2017-12-01 |
Lokal | E10:1308/1309 (Trippelrummet, Navet) |
Kurslängd | 5 days |
Kursrapport |   |
Kursplan |   |
Beskrivning
The course will provide an entry-level introduction to a wide range of analytical techniques for massively parallel sequencing, including basic Linux commands. We will pair lectures on the theory of analysis algorithms with practical computational exercises demonstrating the use of common tools for analyzing data from each of several common sequencing study designs.
Inlärningsmål
Learn to use several analytical techniques for massively parallel sequencing, and to apply them in your own research projects.
Innehåll
Topics covered will include:
Basic Linux usage
NGS read-to-reference alignment (genomic and RNA-Seq)
Variant calling in populations
De novo assembly of RNA-sequence data
Reference-guided RNA-Seq expression analysis
Analysis techniques covered will focus mostly on data from the Illumina platform, but we will discuss other sequencing platforms and the advantages and challenges to using their data.
Undervisning
Applications are only accepted via the course webpage:
https://www.scilifelab.se/events/ngsdataht17ua/
Course fee: 1800 SEK
Examination
Participation on all lectures, exercises and discussions.
Litteratur
Will be given during the course.
Lärare
Manfred Grabherr
Kontakt
https://www.scilifelab.se/events/ngsdataht17ua/
education@scilifelab.uu.se